IMEG - Publications

#mega
TITLE: alignment file for figure 1 in Su et al. 1999

#Chicken_AV611 AQVQQEP SAETSEGTGI NITCSYIQW YRQLPGRAPT FLVPDPAG QLSVSADRLS --SVLCLTR PGLADAAVYY CT
#Chicken_AV612 AQVQQEP SAETSEGTGI NITCSYIHW YRQLPGRAPT FLVPDPAG WLSVSADRRS --SALWLTP PRLGDAAVYY CA
#Chicken_AV613 AQVQQDS SAETSEGTGI NITCSVIQW YRQFPGRGPA FLVPDPEG RLWVSADRRS --SALWLDR PRLGDAAVYY CA
#Cattle_AV011  -SGAEPA SLPVPEGAAA SLGCTYFTW YRQYPGKGPE FLLDKEEG KFTAQSNKTN KHVSLRIRD SEPSDSATYL CA
#Cattle_AV012  TVEQSPA SLPVPEGAAA SLRCTYFTW YRQYPGKRPE FLVNKEEG KFTAQSNKTS KHVSLRIRD SEPSDSATYL CA
#Cattle_AV013  KVEQSPG VLTLQEGRNS SLICNYVQW FQQNPDGRLI SLFMQQKG RLKSTINSKE RYSQLYIRD SQPGDSATYF CA
#Cattle_AV014  SVTQPDD HIAVSE-EPS GAEVQLLFW YIQYPNQGLQ LLLVSGIK GFEAEFRNSE TSFHLRKIP AHWKDSAKYF CA
#Cattle_AV015  KVEQSPS VLSLQEGANS TLRCNFVQW FQQNPGGALT TLFTKKNE RMSSTVNSKE RYSTLHITA SQLEDAATYL CA
#Cattle_AV016  QVFQSPT VVSL-EGAVA EISCNDFLW YFHFPGFAPR LLIPSQQG RYNMTYERFS --SSLLILQ VQTADAGVYY CA
#Cattle_AV017  AKTSQPI FIDSYEGQEV NISCNHILR YVKVPHPGTK FIIENEVA SLLIPPDRKF --STLSLPQ ASLRDTAVYY CI
#Human_AV5     KIEQNSE ALNIQEGKTA TLTCNYLQW YRQDPGRGPV FLLEKRKE RLKVTFDTTL KQSLFHITA SQPADSATYL CA
#Human_ADV17   QVKQSPQ SLIVQKGGIP IINCAYFPW YQQFPGKGPA LLIEKKEG RFTISFNKSA KQFSLHIMD SQPGDSATYF CA
#Human_AV22    SVTQMEG PVTLSEEAFL TINCTYLFW YVQYPGEGLQ LLLKGSNK GFEATYRKET TSFHLEKGS VQVSDSAVYF CA
#Human_AV32    QVMQIPQ YQHVQEGEDF TTYCNSIQW YKQRPGGHPV FLIVKKQK RLTFQFGEAK KNSSLHITA TQTTDVGTYF CA
#Human_AV10    LLEQSPQ FLSIQEGENL TVYCNSLQW YRQEPGEGPV LLVVKKLK RLTFQFGDAR KDSSLHITA AQTGDTGLYL CA
#Human_AV1     SVTQLGS HVSVSEGALV LLRCNYLFW YVQYPNQGLQ LLLVKGIN GFEAEFKKSE TSFHLTKPS AHMSDAAEYF CA
#Human_AV2     EVEQNSG PLSVPEGAIA SLNCTYFFW YRQYSGKSPE LIMDKEDG RFTAQLNKAS QYVSLLIRD SQPSDSATYL CA
#Human_AV7     QSLEQPS EVTAVEGAIV QINCTYLSW YQQHDGGAPT FLSLEETG RFSSFLSRSD SYGYLLLQE LQMKDSASYF CA
#Human_AV8     NVEQHPS TLSVQEGDSA VIKCTYFPW YKQELGKRPQ LIIEKKDQ RIAVTLNKTA KHFSLQIAA TQPGDSAVYF CA
#Human_AV3     QGEEDPQ ALSIQEGENA TMNCSYLQW YRQNSGRGLV HLIEKHSG RLRVTLDTSK KSSSLLITA SRAADTASYF CA
#Human_AV9     RVTQPEK LLSVFKGAPV ELKCNYLFW YVQYSRQRLQ LLLRESIK GFTADLNKGE TSFHLKKPF AQEEDSAMYY CA
#Human_AV11    QVFQ-PS TVASSEGAVV EIFCNHFFW YLHFPGCAPR LLVPSQQG RYNMTYERFS --SSLLILQ VREADAAVYY CG
#Human_AV16    SVAQPED QVNVAEGNPL TVKCTYLFW YVQYPNRGLQ FLLVKGSY GFEAEFNKSQ TSFHLKKPS ALVSDSALYF CA
#Human_AV18    NVEQGPQ SLHVQEGDST NFTCSFLHW YRWETAKTPE ALFKKKKG RISATLNTKE GYSYLYIKG SQPEDSATYL CA
#Human_AV19    EVEQSPQ NLTAQEGEFI TINCSYLHW LQQHPGGGIV SLFKKKHG RLIATINIQE KHSSLHITA SHPRDSAVYI CA
#Human_AV20    KTTQ-PI SMDSYEGQEV NITCSYITW YQQFPSQGPR FIITNEVA SLFIPADRKS --STLSLPR VSLSDTAVYY CL
#Human_ADV21   QVKQSP- SLSVQEGRIS ILNCDYFLW YKKYPAEGPT FLIKNEDG RFTVSLNKSA KHLSPCIVP SQPGDSAVYF CA
#Human_AV13    QVEQSPP DLILQEGANS TLRCNFLQW FHQNPWGQLI NLFTKQNG RLSATTVATE RYSLLYISS SQTTDSGVYF CA
#Human_ADV14   TVTQSQP EMSVQEAETV TLSCTYLFW YKQPPSRQMI LVINATEN RFSVNFQKAA KSFSLKISD SQLGDTAMYF CA
#Human_AV23    EVTQIPA ALSVPEGENL VLNCSFLQW FRQDPGKGLT SLLEQTSG RLNASLDKSS GRSTLYIAA SQPGDSATYL CA
#Human_AV24    QVEQSPQ SLIILEGKNC TLQCNYLRW YKQDTGRGPV SLTTKSNG RYTATLDADT KQSSLHITA SQLSDSASYI CV
#Human_AV25    QLNQSPQ SMFIQEGEDV SMNCTSWLW YKQDPGEGPV LLILTSNG RLTAQFGITR KDSFLNISA SIPSDVGIYF CA
#Human_AV26    ELEQSPQ SLIVQEGKNL TINCTSLYW YKQKYGEGLI FLMEKSHE KITAKLDEKK QQSSLHITA SQPSHAGIYL CG
#Human_AV29    QPVQSPQ AVILREGEDA VTNCSSVHW YRQKHGEAPV FLMQMRRE KISASFNEKK QQSSLYLTA SQLSYSGTYF CG
#Human_ADV28   KVVQSPQ SLVVHEGDTV TLNCSYLQW YKQE-KKAPT FLFEKKSG RLSSILDKKE LFSILNITA TQTGDSAVYL CA
#Human_AV30    QVTQSPE ALRLQEGESS SLNCSCLFW YRQDPGKGPE FLFGEEKE RLKATLTK-- KESFLHITA PKPEDSATYL CA
#Human_AV31    SVKQT-G QITVSEGASV TMNCTYLFW YVEYPSKPLQ LLQMENSK NFGGGNIKD- KNSPIVKYS VQVSDSAVYY CL
#Human_AV12    KVTQAQT EISVVEKEDV TLDCVYLFW YKQPPSGELV FLIIEISG RYSWNFQKST SSFNFTITA SQVVDSAVYF CA
#Human_ADV6    KITQTQP GMFVQEKEAV TLDCTYLFW YKQPSSGEMI FLITATEG RYSLNFQKAR KSANLVISA SQLGDSAMYF CA
#Human_AV4     KTTQ-PP SMDCAEGRAA NLPCNYVYW YRQIHSQGPQ NIIENEMA SLIITEDRKS --STLILPH ATLRDTAVYY CI
#Rabbit_AV885  SVTQTEG PVILSEGSSL TLNCNYLFW YVQYLHEGPQ LLLRMEHQ GFHATFVKKD SSFHLHKSS LQLSDSAVYY CA
#Sheep_AV622   DVSQSPE ALSVREGDSL VLNCSYLQW FRQDPGKGLI SLLEQTSG RITVSLDKSS RHSALYIAT SQRSDSTTYL CA
#Sheep_AV035   KVTQDQP PVSVQEKETV TLDCTYLFW YKQPSSGVMT FLINATEG CYSLNFQKAS KFITLTISA SQLEDSAVYF CA
#Mouse_ADV17   KVTQTQT SISVVEKTTV TMDCVYLFW YKQTASGEIV FLINATVG HYSLNFQKPK SSIGLIITA TQIEDSAVYF CA
#Mouse_AV19    GVEQ-PA KLMSVEGTFA RVNCTYLSW YQQREGQAPV FLSLKDSG HFSTFLSRSN GYSYLLLTE LQIKDSASYL CA
#Mouse_AV1     KVQQSPE SLSVPEGGMA SLNCTSFWW YRQHSGEGPK ALMDKKEG RFTAHLNKAS LHVSLHIRD SQPSDSALYF CA
#Mouse_AV3     SVTQPDA RVTVSQGASL QLRCKYLFW YVQYPRQGLL LLLVQGVN GFEAEFSKSN SSFHPRKAS VHWSDSAVYF CA
#Mouse_ADV4    SVTQTEG QVALSEEDFL TIHCNYLFW YVQYPGEGPQ FLFKGSSR GFEATYNKEA TSFHLQKAS VQESDSAVYY CA
#Mouse_ADV6    KTTQ-PD SMESTEGETV HLPCSYIYW YRQVPLQGPE YVTTNSMA FLAIASDRKS --STLILTH VSLRDAAVYH CI
#Mouse_ADV7    KVIQVWS TTSRQEGEKL TLDCSYLFW YKHLLSGEMV LLIIRRSG RYSVVFQKSR KSISLVIST LQPDDSGKYF CA
#Mouse_ADV10   QVQQSPA SLVLQEGENA ELQCNFLQW FYQSPGGSLV SLLTKHTG RLTSTTVTKE RRSSLHISS SQTTDSGTYL CA
#Mouse_AV8     SVTQTEG LVTVTEGLPV MLNCTYFFW YVQYLNEAPK LLLRTEHQ GFHATLHKSS SSFHLQKSS VQLSDSALYY CA
#Mouse_AV13    QVEQLPS ILRVQEGSSA SINCTYFPW YKQEPGENPK LIIRKQTQ GLIVLLDKKA KRFSLHITD TQPGDSAMYF CA
#Mouse_ADV11   QVEQSPS ALSLHEGTDS ALRCNFVQW FRQNSRGSLI SLFTKENG RLKSAFDSKE RYSTLHIRD AQLEDSGTYF CA
#Mouse_AV5     QVEQRPP HLSVREGDSA VITCTYFFW YKQEPGASLQ LLMINEGQ GFTVLLNKKD KRLSLNLTA AHPGDSAAYF CA
#Mouse_AV12    KTTQ-PP SMEAYEGQEV NVSCSYIYW YRQVPHQGPQ FIIVNEVA SLFISADRKL --STLSLPW VSLRDAAVYY CI
#Mouse_ADV2    QVRQSPQ SLTVWEGGTT VLTCSYFPW YQQFPGEGPA LLIKKEDG RFTTFFNKRE KKLSLHIID SQPGDSATYF CA
#Mouse_AV9     SVDQPDA HVTLSEGASL ELRCSYLFW YVQYPGQSLQ FLLVKGTK GFEAEFRKSN SSFNLKKSP AHWSDSAKYF CA
#Mouse_AV15    KVEQHES TLSVREGDSA VINCTYFPW YKQEAGKGLH FVIRKQSQ RLIVLLDKKA KRFSLHITA TQPEDSAIYF CA
#Mouse_AV14    QVEQSPQ SLVVRQGENC VLQCNYLRW FKQDTGKGLV SLTKTSNG RYSATLDKDA KHSTLHITA TLLDDTATYI CV
#Cattle_DV113  QVTQVQT AISSQVGQTV TLNCRY-FW YKAVPRGEMT FLIN-RDG RYSVNFQKAD KSISLIISA LQLEDSAKYF CA
#Cattle_DV116  KVTQDQS DLSSQVGQSV TLNCRY-FW YKQLPSGQMT YVINAKKD GYSVNFKKAD KSISLTISA LQLQDSAKYF CA
#Cattle_DV1.13 KVTQDQS DVSSHVGQSV TLNCRY-YW YKQLPSGQMT YVINARKD RYSVNFKKAD KSISLTISA LKLEDSAKYF CA
#Human_DV103   KVTQSSP DQTVASGSEV VLLCTY-FW YRIRPDYSFQ FVFDFTQG RFSVKHILTQ KAFHLVISP VRTEDSATYY CA
#Human_DV101   KVTQAQS SVSMPVRKAV TLNCLY-FW YKQLPSKEMI FLINAKSG RYSVNFKKAA KSVALTISA LQLEDSAKYF CA
#Human_DV102   ELVPEHQ TVPVSIGVPA TLRCSM-NW YRKTQGNTMT FIYPGFKD NFQGDIDIAK NLAVLKILA PSERDEGSYY CA
#Mouse_DV104   TVSQPQK KKSVQVAESA TLDCTY-FW YKQQGGQ-VT LVINATLN RFSVNFQKAA KSFSLEISD SQLGDAATYF CA
#Mouse_DV102   KTTQ-PD SMESTEGETV HLPCSH-YW YRQVPLQGPE YVTNTNSA FLAIASDRKS --STLILTH VSLRDAAVYH CI
#Mouse_DV105   TLTQSST DQTVASGTEV TLLCTY-FW YRKRPDRSFQ FILDFVQG RFSVKHSKAN RTFHLVISP VSLEDSATYY CA
#Mouse_DV101   VYLEVAK TFTVVAGDPA SFYCTV-SW YKKNGTNALF LVYDGGKS NLKGKINISK NQFILDIQK ATMKDAGTYY CG
#Rabbit_DV555  KVTQVQQ DIFLSEGSTA TLYCQY-FW YKQLSSGEII YVINAKKD RYSINFQKEA KSVSLTISA LQLGDSSKYL CA
#Rabbit_DV4    HSDPEPL GTGGGEWPGD DLLCTY-YW YREGQTTPLS SSCIG-FC SRSILCDAQT QTFHLVISA VRPEDSAVYY CA
#Rabbit_DV5    NVTQTQP EMSVQEAETA TLDCTY-FW YKQPPSGELV LIINATQN RFSVNFQKAS KSFSLKISD SQLGDAGMYL CA
#Sheep_DV5     KVTQAQT TVTGQEREAV TIGCTY-FW YRQFPGGRME FLINARRD RYSVNFQKGK KIISLTISS LHLADSAKYF CA
#Sheep_DV2     SVTQDQP DILSEVGKTV TLNCRY-FW YKQLPSGQMT YLINARDG RYSVNFKKAD KSISLTISA LQLEDSAKYF CA
#Sheep_DV4     KVTQNQP DISSQVGQSV TLNCQY-VW YKQLPSGQMT YLINARNG RYSVNFQKAD KSISLIISS LQLEDSAKYF CA
#Sheep_DV1.1   KVTQDQS DVSSQLGQSV TLNCQY-FW YKQLPSGQMT YIINARKD RYSVNFRKAD KSISLTISA LQLEDSAKYF CA
#Sheep_DV7     --IQDQT DIPGQLGQSV TLNCRY-FW YKLLPSGEMI YLINAKNG RYSVNIQKAQ KSISLTISD LQLEDSAEYF CA
#Sheep_DV6     KVIQDPP DIPSRVGESV TLNCRC-FW YKHLPSGEMI FLTR--DG HYSINFDRLS KSSSLTIST LQLEDSAKYF CA
#Sheep_DV3.2   VESADVP TVYKKEGESV TVECKF-YW YRQPSSGEMI YMIQTREG RYSVEFYKPN QMLKLTISA LKLSDSAVYF CA