IMEG - Publications

#mega
TITLE: alignment file for figure 5 in Su and Nei 2001

#MBV28S1P
-TCATTCAGACTCC--CAAATCATTGATCCTAAAGGC-AGGACAACATGTGACAATCAAA
TGTACTCAGGA---TATGAAACATGACTCCATGCTTTGGTACCGACAAGATCCATGGTTA
GAA-CTAAGAGTAATCTA--GTATTCCT-ATGATGCTGGAATCA---TTGACAAAGAAGA
GGTCTCTAAGGGGTACAATGTCTCCAGATCATGCACAGAGGACTTCACCTTCACTGTGGA
ATTGGCCTCTCCCTCCCAGACATCTG---TGTACTTCGGTGCCAGCA

#MBV6S1
ATTACTCAGACACC--CAAATTCCTGATTGGTCAGGA-AGGGCAAAAACTGACCTTGAAA
TGTCAACAGAA---TTTCAATCATGATACAATGTACTGGTACCGACAGGATTCAGGGAAA
GGA-TTGAGACTGATCTA--CTATTCA--ATAA--CTGAAAACGATCTTCAAAAAGGCGA
TCTATCTGAAGGCTATGATGCGTCTCGAGAGAAGAAGTCATCTTTTTCTCTCACTGTGAC
ATCTGCCCAGAAGAACGAGATGGCCG---TTTTTCTCTGTGCCAGCA

#MBV8S2
GTCACCCAAAGCCC--AAGAAACAAGGTGGCAGTAAC-AGGAGGAAAGGTGACATTGAGC
TGTAATCAGAC---TAATAACCACAACAACATGTACTGGTATCGGCAGGACACGGGGCAT
GGG-CTGAGGCTGATCCA--TTATTCAT-ATGGTGCTGGCAGCA---CTGAGAAAGGAGA
TATCCCTGATGGATACAAGGCCTCCAGACCAAGCCAAGAGAACTTCTCCCTCATTCTGGA
GTTGGCTACCCCCTCTCAGACATCAG---TGTACTTCTGTGCCAGCG

#MBV8S3_2
GTCACCCAAAGTCC--AAGAAGCAAGGTGGCAGTAAC-AGGAGGAAAGGTGACATTGAGC
TGTCACCAGAC---TAATAACCATGACTATATGTACTGGTATCGGCAGGACACGGGGCAT
GGG-CTGAGGCTGATCCA--TTACTCAT-ATGTCGCTGACAGCA---CGGAGAAAGGAGA
TATCCCTGATGGGTACAAGGCCTCCAGACCAAGCCAAGAGAATTTCTCTCTCATTCTGGA
GTTGGCTTCCCTTTCTCAGACAGCTG---TATATTTCTGTGCCAGCA

#MBV8S3
GTCACCCAAAGCCC--TAGAAACAAGGTGACAGTAAC-AGGAGGAAACGTGACATTGAGC
TGTCGCCAGAC---TAATAGCCACAACTACATGTACTGGTATCGGCAGGACACTGGGCAT
GGG-CTGAGGCTGATCCA--TTACTCAT-ATGGTGCTGGCAACC---TTCAAATAGGAGA
TGTCCCTGATGGGTACAAGGCCACCAGAACAACGCAAGAAGACTTCTTCCTCCTGCTGGA
ATTGGCTTCTCCCTCTCAGACATCTT---TGTACTTCTGTGCCAGCA

#MBV25S1P
-TCACCCAGACACC--TAGATACTGGATCACACAGAC-CTCAAGAAAGATAATCCTGAAC
TATTCTCAGGA---TATGAACCACTATCGGATGTTCTGGTATCAACAAGATGCAGGGCAG
GGG-TTGAAGCTGATCCA--TTACTCAG-TAGGCACTGACAGAA---CTACCAAAAGTGA
TGTCCCTGAAGGGTACAGTGCCTTCAGAAATGAGATACAGAGCTTTCCCCTGACATTAGA
GTCAACCAGTTCCAACCAGACCTCCA---TGTACTTCTGGGCCAGCA

#MBV7S1
GTAACCCAGATGCC--AAGATACCTGATCAAAAGAAT-GGGAGAGAATGTTTTGCTGGAA
TGTGGACAGGA---CATGAGCCATGAAACAATGTACTGGTATCGACAAGACCCTGGTCTG
GGG-CTACAGCTGATTTA--TATCTCAT-ACGATGTTGATAGTA---ACAGCGAAGGAGA
CATCCCTAAAGGATACAGGGTCTCACGGAAGAAGCGGGAGCATTTCTCCCTGATTCTGGA
TTCTGCTAAAACAAACCAGACATCTG---TGTACTTCTGTGCTAGCA

#MBV15S1
TCTATCAATATCCCAGAAGAACCAT-CTGTAAGAGT---GGAACTTCCATGAGGATGGAG
TGTCAAGCTGTGGGTTTTCAGGCAACTTCTGTAGCTTGGTATCGTCAATCGCCTCAAAAG
ACA-TTTGAACTGATAGCACTTTCTACTGTGAACTCAGCAATCAAATATGAACAAAATTT
TACCCAGGAAAAATTTCCCATCAGTCATCCCAACTTATCCTTTTCATCTATGACAGTTTT
AAATGCATATCTTGAA--GACAGAGG-CTTATATCTCTGTGGTGCTA

#MBV18S1
TCTACCAAAAGCCAAACAGGGACAT-CTGTCAAAGT---GGCACTTCACTGAAAATCCAG
TGTGTGGCTGACAGT---CAAGTTGTTTCGATGTTTTGGTACCAACAGTTCCAGGAACAG
AGC-TTGATGCTCATGGCAACTGCAAATGAAGGCTCTGAAGCCACATACGAGAGTGGATT
CACCAAGGACAAGTTTCCAATCAGCCGGCCAAACCTAACATTCTCAACGTTGACAGTGAA
CAATGCAAGGCCTGGA--GACAGCAG-TATCTATTTCTGTAGTTCTA

#MBV5S2
GTTGTCCAGTCTCC--AAGACACATAATCAAAGAAAA-GGGAGGAAGGTCCGTTCTGACG
TGTATTCCCA---TCTCTGGACATAGCAATGTGGTCTGGTACCAGCAGACTCTGGGGAAG
GAA-TTAAAGTTCCTTA---TTCAGCATTATGAAAAGGTGGAGA--GAGACAAAGGATTC
CTACCC-AGCAGATTCTCAGTCCAACAGTTTGATGACTATCACTCTGAAATGAACATGAG
TGCCTTGGAACTGGAG--GACTCTGC-TATGTACTTCTGTGCCAGCT

#MBV5S3P
GTTGTCCAGTCTCC--AAGACACAAAATCAAAGAAAA-GGGAGAAAGGTTCATTCTGAAA
GTTATTCCCACC-TCTCTGAACATAGCCATGCGGTCCGGTACCAACAGACTCGGGATCAG
GAA-CTAAAGTTCCTCA---TTCAGAATTATGAAAAAGCTGAGG--GAGAGAAAGGAAAC
CTGCCT-GGTTGATTTTTAATCCAACAGTTCAACGACTTTTACTCTGAGATTAACCTGAG
TGCCTTGGACCTAGAG--GACTTTAC-TGTGTACTTTTGTGCCAGCT

#MBV5S1
GTTGTCCAGTCTCC--AAGATACATAATCAAAGGAAA-GGGAGAAAGGTCCATTCTAAAA
TGTATTCCCA---TCTCTGGACATCTCTCTGTGGCCTGGTATCAACAGACTCAGGGGCAG
GAA-CTAAAGTTCTTCA---TTCAGCATTATGATAAAATGGAGA--GAGATAAAGGAAAC
CTGCCC-AGCAGATTCTCAGTCCAACAGTTTGATGACTATCACTCTGAGATGAACATGAG
TGCCTTGGAGCTAGAG--GACTCTGC-CGTGTACTTCTGTGCCAGCT

#MBV3S1
GTCATTCAGACTCC--AAGATATCTGGTGAAAGGGCA-AGGACAAAAAGCAAAGATGAGG
TGTATCCCTGA---AAAGGGACATCCAGTTGTATTCTGGTATCAACAAAATAAGAACAAT
GAG-TTTAAATTTTTGA---TTAACTTTCAGAATCAAGAAGTTCTTCAGCAAATAGACAT
GACTGAAAAACGATTCTCTGCTGAGTGTCCTTCAAACTCACCTTGCAGCCTAGAAATTCA
GTCCTCTGAGGCAGGA--GACTCAGC-ACTGTACCTCTGTGCCAGCA

#MBV21S1P
GTTATCCAGACTCACATTCAGATCTGGCAAAGAGGAA-AGGACAAAGAGCAAAGATGAGC
TGATAGTCCT-----ATGTGGCATATTACTGGTTTTTGGTATCA-CAGGAACAGAAGAAA
GAG-TTTAGGGTTCTTT---TGTATTTACAGAATCAAGAAGCTATTCAACAAATAG----
-GTTCAGAAGTGATCCAGAGCAGAATGTTTCCCAATCTCATCCTTCATCTTGGAAATGCA
GTCCTCAGAAGCAGGA--GATTCTAC-ATTGCACTTCTGTGCCAG--

#MBV17S1P
GTAACCCAGACTCC--ACGATACCTGGTCAAAGAGAA-AGGACAGAAAGCACACATGAGT
TGTAGTCCTGA---AAAAGGGCACACTGCCTTTTACTGGTATCAACAGAACCAGAAACAA
GAA-CTTACATTTTTGA---TTAACTTTCGAAATGAAGAAATTATGGAACAAACAGACTT
GGTCAAGAAGAGATTCTCAGCTAAGTGTTCCTCGAACTCACAGTGCATCCTGGAAATCCT
ATCCTCTGAAGAAGAC--GACTCAGC-ACTGTAGCTCTGTGCCAGCA

#MBV20S1
GTTACACAGAAGCC--AAGATATTTGATCAAAATGAA-AGGCCAGGAAGCAGAGATGAAA
TGTATCCCTGA---AAAGGGGCACACTGCTGTTTTCTGGTATCAACAAAAGCAGAGCAAA
GAA-TTAAAGTTCCTGA---TTTACTTTCAGAATCAACAGCCTCTTGATCAAATAGACAT
GGTCAAGGAGAGATTCTCAGCTGTGTGCCCCTCCAGCTCACTCTGCAGCCTGGGAATCAG
AACGTGCGAAGCAGAA--GACTCAGC-ACTGTACTTGTGCTCCAGCA

#MBV19S1P
GTTGTCCAGAATCC--TAGACATCTGGTCAAAGGAAA-AGAACAGAAAGCCAAAATGGAT
TGCACCCCCAT---AAACGGACATAGTTACGTTTATTGGTACTACAAGAAACCGGGAGAA
GAA-CTCAAATTTTTGG---TTTACTTTCAGAATGAAGACATCATCGACAAAATAGATAT
GATTGGTAAAAACATTTCAGCAAAATGCCCTGCTAAGAAACCATGTACCATAGAGATCCA
GTCCAGCAAGCTAACA--GATTCAGC-TGTGTACTTCTGTGCTAGCA

#MBV22S1P
GTTATCCAGACTCC--ATGACGTCTTTTCAAAGGCAA-AGGACAGAAAGCAAAAATGAGC
TGTATCCCAGA---AAAGGGACATTCTTTTGTTTATTGGTACCAACAGAAGCAGAAAGAA
GAG-TTAAAGTTTTTTTAT-TTTTTTTTCAACATCAAGAAGCTCATGACAGAACAGACTT
GTTCAAGAAGTGACTCTTAGCTAAGTGTCCCTTAAGCTCACCCTGCAGCTTGGAAATCAG
TTCCTCTGAGGCTGGA--GACTCAGT-GTTATACCTCTGTGCCAGCA

#MBV4S1
ATTATCCAGAAACC--AAAATATCTGGTGGCAGTCACAGGGAGCGAAAAAATCCT-GATA
TGCGAACAGTA---TCTAGGCCACAATGCTATGTATTGGTATAGACAAAGTGCTAAGAAG
CCT-CTAGAGTTCATGT---TTTCCTACAGCTATCAAAAACTT---ATGGACAATCAGAC
TGCCTCAAGTCGCTTCCAACCTCAAAGTTCAAAGAAAAACCATTTAGACCTTCAGATCAC
AGCTCTAAAGCCTGAT--GACTCGGC-CACATACTTCTGTGCCAGCA

#MBV1S1
ATTACTCAGTCACC--AAGATATCTAATCCTGGGAA----GAGCAAATAAGTCTTTGGAA
TGTGAGCAACA---TCTGGGACATAATGCTATGTACTGGTATAAACAGAGCGCTGAGAAG
CCG-CCAGAGCTCATGT---TTCTCTACAATCTTAAACAGTTG---ATTCGAAATGAGAC
GGTGCCCAGTCGTTTTATACCTGAATGCCCAGACAGCTCCAAGCTACTTTTACATATATC
TGCCGTGGATCCAGAA--GACTCAGC-TGTCTATTTTTGTGCCAGCA

#MBV10S1
GTTTTCCAGACTCC--AAACTATCATGTCACACAGGT-GGGAAATGAAGTGTCTTTCAAT
TGTAAGCAAAC---TCTGGGCCACGATACTATGTATTGGTACAAGCAAGACTCTAAGAAA
TTG-CTGAAGATTATGT---TTAGCTACAATAATAAGCAACT---CATTGTAAACGAAAC
AGTTCCAAGGCGCTTCTCACCTCAGTCTTCAGATAAAGCTCATTTGAATCTTCGAATCAA
GTCTGTAGAGCCGGAG--GACTCTGC-TGTGTATCTCTGTGCCAGCA

#MBV9S1
GTTAAGCAGAACCC--AAGATACAAGCTTGCAAGAGT-TGGAAAACCAGTGAATTTGATC
TGTTCTCAGAC---TATGAATCATGATACCATGTACTGGTACCAAAAGAAGCCAAACCAA
GCA-CCAAAGCTTCTTC---TTTTCTACTATGATAAGATTTTGAACAGGGAAGCTGACAC
TTTTGAGAAGTTCCAATCCAGTCGGCCT---AACAATTCTTTCTGCTCTCTCTACATTGG
CTCTGCAGGCCTAGAG--TATTCTGC-CATGTACCTCTGTGCTAGCA

#MBV26S1P
----------CATT--CAGTTATGATGTTACAGACAT-GGGACAGAATGTCATTTAGAGA
TATAACACAAT---TTCTGGTCATTTTGTCACATTTTCATACCAACAGACACTAGGAAAA
GGT-GTGGAGTTTCTGG---CTTCATTCTATGATACAGTTCATTTGGAAAGGGCTGACGT
TTTCAGTACTCAA-------CAGAGATGCCTGATGGATTGTTCTCCACTCTGAAGATTCA
GCATGTTCAGCCAGAG---ACTCCAC-TATGTAT------GCCAGCA

#MBV12S1
GTTACCCAGACACC--CAGACATGAGGTGGCAGAGAA-AGGACAAACAATAATCCTGAAG
TGTGAGCCAGT---TTCAGGCCACAATGACCTTTTCTGGTACAGACAGACCAAGATACAG
GGA-CTAGAGTTGCTGA---GCTACTTCCGCAGCAAGTCTCTTATGGAAGATGGTGGGGC
TTTCAAGGATCGATTCAAAGCTGAGATGCTAAATTCATCCTTCTCCACTCTGAAGATTCA
ACCTACAGAACCCAAGG--ACTCAGC-TGTGTATCTGTGTGCCAGCA

#MBV11S1
GTCATCCAAACACC--TAGGCACAAGGTGACAGGGAA-GGGACAAGAAGCAACTCTGTGG
TGTGAGCCAAT---TTCAGGACATAGTGCTGTTTTCTGGTACAGACAGACCATTGTGCAG
GGC-CTGGAGTTCCTGA---CTTACTTTCGAAATCAAGCTCCTATAGATGATTCAGGGAT
GCCCAAGGAACGATTCTCAGCTCAGATGCCCAATCAGTCGCACTCAACTCTGAAGATCCA
GAGCACGCAACCCCAGG--ACTCAGC-GGTGTATCTTTGTGCAAGCA

#MBV24S1P
----------ATCC--CATGTACAGAGTTACAAAGAG-GGGATAAGATGTAGTTATTAAG
TGTGACACAAT---TTCTGGTCCTACTGGACTTTATTGCTACTGACAGAACTCAAGATGA
GGC-CCAGTGTTTCTGG---TGAATTTCCAGGGTGAGTTTATATCCACCAAATCTGGAAT
GCCCAGTGACCATTTCTCTGCAGTGAGGCCCGAGGGCTCCTTCTCCATGTTGAAGAGCCA
ATCAACACATCAAGAA--GACTTAGG-CATCTATCTCTGTGCCAGAA

#MBV29S1P
--------GTCTCC--TACTCATAGGATCACCAAAAA-GTGAAAGGATGTATGT-TTCAG
GGTGATCTAAT---TTCAGGACACAATCCCCTTTACTGGTATCGACAGATCTTGGGGCAA
GAG-CCATGGTTTCTAA---CTTATTTACAGAATGGAGCTCCACCAGACAAATCAGGATT
TCCTAGTCATCACTTTACTGTTGAGAGGCTTGAAGGATCCTACTCTATTCTGAAGACCCA
GACTGTGAAGCGGGACTCGACAGAGCACCTCTCTTTCAGTG------

#MBV13S1
GTCACCCAGTCTCC--CAGATATGCAGTCCTACAGGA-AGGGCAAGCTGTTTCCTTTTGG
TGTGACCCTAT---TTCTGGACATGATACCCTTTACTGGTATCAGCAGCCCAGAGACCAG
GGG-CCCCAGCTTCTAG---TTTACTTTCGGGATGAGGCTGTTATAGATAATTCACAGTT
GCCCTCGGATCGATTTTCTGCTGTGAGGCCTAAAGGAACTAACTCCACTCTCAAGATCCA
GTCTGCAAAGCAGGGC--GACACAGC-CACCTATCTCTGTGCCAGCA

#MBV16S1
-----ACAGATCCC--AAGTCATCAAATAATAGATAT-GGGGCAGATGGTGACCCTCAAT
TGTGACCCAGT---TTCTAATCACCTATATTTTTATTGGTATAAACAGATTTTAGGACAG
CAG-ATGGAGTTTCTGG---TTAATTTCTACAATGGTAAAGTCATGGAGAAGTCTAAACT
GTTTAAGGATCAGTTTTCAGTTGAAAGACCAGATGGTTCATATTTCACTCTGAAAATCCA
ACCCACAGCACTGGAG--GACTCAGC-TGTGTACTTCTGTGCCAGCA

#MBV30S1P
ATCTCCAAAACTCC--AAAGTACTCTATTATGGGGAC-TGGAAAGAAAATTATTCTGGAA
AGTTCTCAAAC---CATGCCCTGTGACAAAATGTATTGGTATCAGCAAGACCCAGG-CAT
GGAACTATGGCTGCGCCA--TTGTTCAT-ATGGCATTAATAATACAGAGAAATTAGAGCT
TTCCTTTGAGTGTAATA-----TTCAGAG--AATGAATCCTACCTCATGTTAAGCA--CA
TTTTTCATACACAGCC----CTCCACACTCCTGCCTCTTTCCAACC-

#MBV23S1P
GTCACCACGAACCT--AAGATACATGGTGAGGAAGAG-ATGATAGGATGTGACCCTTCGA
AGTG---AAA--------GAACACAGTCATGTTATATGGTATAGTCATGGTTATATGGAA
AGATGTGAAATTTGTGA---CTTCTGTTCAGAAAGAGTATTA----GAGAGGCCAGGAAT
GCTGGAGAAATCGTTCTTGGATAAATTTCCCCAAGAGGAACCCAACATCCT-AAAGTGGG
GCCAGCAGATCTGGAAGATGCAGAGC---TATACTTCTGTGCCAGCT

#MBV2S1
-----GCAAAACCC--AAGGTGTCTGGTACCACGTG----GTCAAGCTGTGAACCTACGC
TGCATCTTGAAGAATTCCCAGTATCCCTGGATGAGCTGGTATCAGCAGGATCTCCAA-AA
GCAACTACAGTGGCTGT---TCACTCTGCGGAGTCCTGGGGACAAAGAGGTCAAATCTCT
TCCCGGTGCTGATTACCTGGCCACACGGGTCACTGATACGGAGCTGAGGCT-----GCAA
GTGGCCAACATGAGCCAGGGCAGAAC-CTTGTAC---TGCACCTGCA

#va5
GTGGAGCAGCGCCC--TCCTCACTGAGTGTCCGGGA--GGGAGACAGTGCCGTTATCACC
TGCACCTACACAGACCCTAACAGTTATTACTTCTTCTGGTACAAGCAAGAGCCGGGGCAA
GT--CTTCAGTTGCTTATGAAGGTTTTCTCAAGTACGGAAATAAACGAAGGACAAGGA--
-TTCACTGTCCTA--CTGAACAAGAAAGACAAACGACTCTCTC-------TGAACCTCAC
AGCTGCCCATCCTGGG--GACTCAGC-CGCGTACTTCTGCGCAGTCA