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Supplementary material for the Web. |
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Estimation of Divergence Times from Multiple Protein Sequences (manuscript) |
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Table 4. 11 protein sequence data used for estimation of early divergence time |
| Protein | Human | Rat | Chicken | Drosophila | Nematode | Fungi (yeast) | Plants (Arabidopsis) | Protists (Plasmodium falciparum) | Eubacteria (E. coli) |
| Intermediary metabolism | |||||||||
| L-LACTATE DEHYDROGENASE (EC 1.1.1.27) | RDa | NP_036727b | RD | RD | RD | T50135 | RD (maize) | AAC46863 | RD (Cyanobacterium synechocystis) |
| ALDEHYDE DEHYDROGENASE (NAD+) (EC 1.2.1.3) | RD | RD | RD | AAF52769 | RD | RD | RD (maize) | RD (Sauroleishmania tarentolae) | RD |
| PYRUVATE KINASE (EC 2.7.1.40) | RD | KIRTPR | RD | O62619 | RD | RD | RD (soy bean) | RD (Trypanosoma brucei) | RD |
| PHOSPHOGLYCERATE KINASE (EC 2.7.2.3) | RD | RD | I50407 | RD | RD | RD | P50318 | RD | RD |
| ENOLASE (EC 4.2.1.11) | RD | RD | RD (duck) | RD | RD | RD | RD | RD | RD |
| TRIOSE-PHOSPHATE ISOMERASE (EC 5.3.1.1) | RD | AAA42278 | RD | RD | RD | RD | RD (maize) | RD (Trypanosoma brucei) | RD |
| Biosynthesis of small molecules | |||||||||
| NUCLEOSIDE-DIPHOSPHATE KINASE (EC 2.7.4.6) | RD | RD | AAB99856 | RD | RD | RD | RD | AAD48446 (Trypanosoma brucei) | RD |
| DIHYDROFOLATE REDUCTASE (EC 1.5.1.3) | RD | RD | RD | AAF55324 | Q93341 | RD | RD | RD | RD |
| Macromolecule metabolism | |||||||||
| REPLICATION FACTOR C | NP_002905 | g11177922 (Mouse) |
P53033 | P53034 | AAB88360 | T37746 | AAF18689 | H71604 | AAC07663 (Aquifex aeolicus) |
| Adaptations to atypical conditions | |||||||||
| HEAT SHOCK PROTEIN HSP70 | AAD11466 | NP_068635 | P08106 | P11147 | T21394 | NP_011029 | BAB02269 | P11144 | P04475 (E. coli) |
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Laboratory of Masatoshi Nei | |
